Small RNA Annotation Service
Now you can easily perform small RNA annotation using sRNAminer.
Citation: Li, G., Chen, C., Chen, P., Meyers, B. C., & Xia, R. (2024). sRNAminer: A multifunctional toolkit for next-generation sequencing small RNA data mining in plants. Science bulletin, 69(6), 784–791.
List of Completed Annotations
Softwares
IGV-sRNA
![miRNA](./img/igvSnapspot/miRNA.png)
![phas21](./img/igvSnapspot/phas21.png)
![phas24](./img/igvSnapspot/phas24.png)
![hcsiRNA](./img/igvSnapspot/hcsiRNA.png)
IGV-sRNA is developed on the basis of IGV,
and is specifically optimized for small RNA data visualization.
Several useful features are introduced:
- sRNA mode: sRNA mode: display sRNA alignment with different color codes according to read length
- ReadLen Track: show sRNA abundance with color-coded dots
- PhaseScore Track: calculate phasing score of phasiRNAs instantly according their length
- RNAfold invoker: fold a sequence to show the secondary structure
- ...
Download
- windows-32-bits
- windows-64-bits
- Mac OS
- Linux
- Repeat Score Track Data Store
- User Guide // Demo Data
Thanks to the open-source license, we create the IGV-sRNA installers with the multi-platform installer builder install4j from ej-Technologies.